Atomistry » Californium » PDB 5kic-5kic » 5kic
Atomistry »
  Californium »
    PDB 5kic-5kic »
      5kic »

Californium in PDB 5kic: Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series

Protein crystallography data

The structure of Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series, PDB code: 5kic was solved by P.B.Rupert, R.K.Strong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.70
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 119.574, 119.574, 108.839, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.2

Other elements in 5kic:

The structure of Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Californium Binding Sites:

The binding sites of Californium atom in the Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series (pdb code 5kic). This binding sites where shown within 5.0 Angstroms radius around Californium atom.
In total 3 binding sites of Californium where determined in the Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series, PDB code: 5kic:
Jump to Californium binding site number: 1; 2; 3;

Californium binding site 1 out of 3 in 5kic

Go back to Californium Binding Sites List in 5kic
Californium binding site 1 out of 3 in the Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series


Mono view


Stereo pair view

A full contact list of Californium with other atoms in the Cf binding site number 1 of Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cf201

b:0.2
occ:1.00
O10 A:4OL202 2.2 93.5 1.0
O47 A:4OL202 2.8 93.7 1.0
O46 A:4OL202 2.8 0.1 1.0
O9 A:4OL202 3.0 69.8 1.0
N3 A:4OL202 3.2 76.1 1.0
O50 A:4OL202 3.2 1.0 1.0
C4 A:4OL202 3.5 72.6 1.0
C36 A:4OL202 3.6 90.7 1.0
O48 A:4OL202 3.6 0.8 1.0
N35 A:4OL202 3.7 95.1 1.0
O51 A:4OL202 3.7 93.7 1.0
N45 A:4OL202 3.8 0.6 1.0
NZ A:LYS125 3.8 70.9 1.0
C44 A:4OL202 4.0 0.5 1.0
NZ A:LYS134 4.1 52.6 1.0
CE A:LYS125 4.2 64.9 1.0
C2 A:4OL202 4.4 79.2 1.0
N9 A:4OL202 4.6 96.8 1.0
CZ3 A:TRP79 4.7 81.8 1.0
CH2 A:TRP79 4.8 82.3 1.0
C5 A:4OL202 4.8 71.2 1.0
C40 A:4OL202 4.8 0.8 1.0
C37 A:4OL202 4.9 89.8 1.0
C1 A:4OL202 4.9 82.4 1.0
OH A:TYR106 4.9 53.4 1.0
C14 A:4OL202 4.9 1.0 1.0

Californium binding site 2 out of 3 in 5kic

Go back to Californium Binding Sites List in 5kic
Californium binding site 2 out of 3 in the Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series


Mono view


Stereo pair view

A full contact list of Californium with other atoms in the Cf binding site number 2 of Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cf201

b:0.3
occ:1.00
O10 B:4OL202 2.3 0.8 1.0
O46 B:4OL202 2.7 1.0 1.0
O50 B:4OL202 3.0 0.9 1.0
O47 B:4OL202 3.1 90.0 1.0
O9 B:4OL202 3.3 75.7 1.0
O51 B:4OL202 3.3 91.9 1.0
N3 B:4OL202 3.3 87.1 1.0
N35 B:4OL202 3.7 0.0 1.0
C4 B:4OL202 3.7 80.9 1.0
N45 B:4OL202 3.7 0.3 1.0
C36 B:4OL202 3.8 96.0 1.0
O48 B:4OL202 3.8 0.1 1.0
C44 B:4OL202 3.8 0.5 1.0
NZ B:LYS125 4.0 71.5 1.0
NZ B:LYS134 4.1 67.9 1.0
CE B:LYS125 4.4 67.7 1.0
C2 B:4OL202 4.5 89.5 1.0
N9 B:4OL202 4.6 0.5 1.0
C14 B:4OL202 4.6 0.8 1.0
CZ3 B:TRP79 4.7 80.2 1.0
O54 B:4OL202 4.8 0.5 1.0
OH B:TYR106 4.9 55.9 1.0
N32 B:4OL202 4.9 0.3 1.0
C1 B:4OL202 4.9 92.7 1.0
CH2 B:TRP79 4.9 79.8 1.0
C40 B:4OL202 4.9 0.8 1.0
C34 B:4OL202 5.0 0.9 1.0
C5 B:4OL202 5.0 83.2 1.0

Californium binding site 3 out of 3 in 5kic

Go back to Californium Binding Sites List in 5kic
Californium binding site 3 out of 3 in the Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series


Mono view


Stereo pair view

A full contact list of Californium with other atoms in the Cf binding site number 3 of Long-Sought Stabilization of Berkelium(IV) in Solution: An Anomaly Within the Heavy Actinide Series within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cf201

b:0.4
occ:1.00
O10 C:4OL202 2.2 82.0 1.0
O46 C:4OL202 2.7 96.7 1.0
O47 C:4OL202 2.9 88.6 1.0
O50 C:4OL202 2.9 0.5 1.0
O9 C:4OL202 3.1 74.1 1.0
N3 C:4OL202 3.1 77.9 1.0
O51 C:4OL202 3.1 0.4 1.0
O48 C:4OL202 3.2 94.7 1.0
C4 C:4OL202 3.5 76.9 1.0
N35 C:4OL202 3.6 88.0 1.0
C36 C:4OL202 3.6 85.8 1.0
N45 C:4OL202 3.7 0.0 1.0
C44 C:4OL202 3.7 0.7 1.0
NZ C:LYS125 3.9 57.9 1.0
NZ C:LYS134 4.1 52.2 1.0
C2 C:4OL202 4.3 80.7 1.0
CE C:LYS125 4.3 54.0 1.0
O49 C:4OL202 4.4 0.5 1.0
N9 C:4OL202 4.5 98.2 1.0
N27 C:4OL202 4.5 0.3 1.0
C5 C:4OL202 4.8 76.6 1.0
C1 C:4OL202 4.8 89.1 1.0
CZ3 C:TRP79 4.8 68.7 1.0
C37 C:4OL202 4.9 87.2 1.0
C34 C:4OL202 4.9 91.0 1.0
C40 C:4OL202 4.9 0.3 1.0
N32 C:4OL202 4.9 0.6 1.0
C29 C:4OL202 4.9 95.1 1.0
C43 C:4OL202 5.0 0.9 1.0
C26 C:4OL202 5.0 0.2 1.0
CH2 C:TRP79 5.0 69.4 1.0

Reference:

G.J.Deblonde, M.Sturzbecher-Hoehne, P.B.Rupert, D.D.An, M.C.Illy, C.Y.Ralston, J.Brabec, W.A.De Jong, R.K.Strong, R.J.Abergel. Chelation and Stabilization of Berkelium in Oxidation State +IV. Nat Chem V. 9 843 2017.
ISSN: ESSN 1755-4349
PubMed: 28837177
DOI: 10.1038/NCHEM.2759
Page generated: Sat Dec 12 08:30:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy